The superior lateral and anterior regions are composed of the anterior nucleus and the lateral dorsal nucleus (dorsal superficial nucleus). They have predominant connections to the limbic system, which is involved in alertness, awareness, learning, memory, and emotion. The anterior nuclear group is composed primarily of the anteromedial and anteroventral nuclei, along with the smaller anterodorsal nuclei. They receive input from the hippocampal subiculum (via the fornix and mamillothalamic tract), the anterior cingulate, the posterior cingulate, the retrosplenium, the inferior parietal lobule, and the generate reciprocal output. The anteromedial nucleus has strong reciprocal cortical connections, suggesting that it serves a role in prefrontal processing (e.g., cognitive flexibility, judgement, executive function). The anteroventral nucleus is strongly connected to the retrosplenium and hippocampus and has a role in the optimization of synaptic plasticity and, on a larger scale, memory formation. The anterodorsal nucleus projects to the post-subiculum and the retrosplenium and has been shown to encode the orientation of the head; it is hypothesized to play a role in spatial navigation and manipulation. The strong functional limbic connectivity is of clinical significance in the surgical treatment of epilepsy. The lateral dorsal nucleus connects primarily with the subiculum, retrosplenium, and visual area 18a, with efferents primarily to the limbic cortex. Its role is not well understood, but it is thought to function together with the pulvinar nuclei of the thalamus.

The medial region includes the mediodorsal (MD) nucleus (dorsomedial nucleus), which is thought to play a role in emotional processing and in coordinating attention to potentially dangerous sensory (noxious) information. The MD thalamic nuclei has a patchy composition made up of three subregions known as the magnocellular (medial), the parvocellular (central), and the densocellular (lateral). Among the many outputs of the MD thalamic nucleus is its projection to the prefrontal cortex in an organized manner, with the magnocellular region to the orbital cortex, the parvicellular region to the dorsolateral cortex, and the densocellular region to the frontal eye fields (involved in direction of eye movements called saccades). The MD thalamic nucleus also projects to the basal forebrain, cingulate cortex, insula, premotor cortex, and parietal cortex.

The posterior region includes the large pulvinar nucleus, which makes up approximately 30 percent of the thalamic volume in humans. Its primary functions relate to multisensory integration and behavioral orientation. As such, it has strong connections with the parietal association cortex. Similar to other association nuclei, it also has widespread projections to the prefrontal cortex, multisensory nuclei (primary and higher-order visual cortex, somatosensory cortex), cingulate cortex, insula, and amygdala. While subdivisions (e.g., medial, lateral, inferior, and superior) have been theorized in the pulvinar nucleus, they are spatially indistinct and have unclear functional distinctions.

Midline/intralaminar nuclei

The midline (periventricular or paramedian) nuclear group is composed of the dorsal group; the paratenial and paraventricular nuclei; and the ventral group, nucleus reuniens, and rhomboidal nucleus.

The dorsal group is thought to have a role in stress, fear, and reward relay and response. The paratenial nucleus has reciprocal connections to other thalamic nuclei (medial dorsal nucleus, nucleus reuniens, pulvinar and reticular nuclei), to the hypothalamus, and to the medial septum, with outputs to the limbic forebrain, nucleus accumbens, ventral striatum, and amygdala. The paraventricular nucleus receives input from hypothalamic nuclei, has reciprocal input/output with limbic structures (nucleus accumbens and amygdala), and has strong connections with the medial prefrontal cortex.

The ventral region, composed of the nucleus reuniens, is a limbic relay station. It has input from limbic structures (limbic cortex, amygdala), from the basal forebrain, and from the hypothalamus and has strong efferent outputs to the hippocampus, limbic cortex, prefrontal cortex, insula, and amygdala.

The intralaminar nuclei are named for their location within the internal medullary lamina. They are grossly divided into rostral (anterior) and caudal (central) groups. The rostral intralaminar group is composed of the paracentral, central medial, and central lateral (CL) nuclei. They are thought to have functions in arousal, awareness, executive cognitive functioning, and response to visceral pain stimuli. The rostral intralaminar nuclei receive input from distributed subcortical arousal structures and subcortical pain areas. They target the association and limbic striatum (basal ganglia), limbic/pre-limbic cortex, and entorhinal cortex, as well as distributed association cortices. The central medial nucleus targets rostro-caudal regions, while the CL nucleus targets dorsolateral regions of the striatum.

The caudal intralaminar group is composed of the centromedian (CM), parafasicular (Pf), and subparafasicular (SPf) nuclei. Pf is a nucleus medial to CM and thought to be a continuation of the latter. The caudal/central intralaminar nuclei have reciprocal connections with the basal ganglia (with predominant output to the striatum) and have output to the ventral tegmental area, subthalamic nucleus, hypothalamus, amygdala, and limbic cortex. They receive cortical input as well as input from brainstem arousal structures, the superior colliculus, and brainstem sensory nuclei. Their disparate inputs and outputs have suggested CM and Pf involvement in many functions, including the modulation of movement and then regulation of pain and arousal.

Reticular nucleus

The reticular nucleus, with its unique morphology, connectivity, and neurochemistry, deserves a separate category from other thalamic nuclei. It forms a shell surrounding the lateral aspect of the thalamus and is separated from other thalamic nuclei by the external medullary lamina. It receives input from many regions of the cortex and basal ganglia, as well as from thalamic neurons en route to the cortex. The reticular nucleus has inhibitory cells, using the neurotransmitter GABA. It projects to other nuclei within the thalamus, modulates the flow of signals from thalamic nuclei, and controls thalamocortical rhythmic activity.